Our mission
Taking Innovation Into the Real World
Our mission is to use the knowledge and tools of molecular evolution to advance research and product development in biomedical biodiversity. We accomplish this mission by making fundamental discoveries, developing informatics resources and training the next generation of young scientists.
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Michael L. Klein, Carnell Professor
Meet Our Team

Michael L. Klein
Laura H. Carnell Professor of Science / ICMS Director / TMI Director / Former CST Dean
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Biography
My research interests focus on the use of theoretical & computational methods to study the properties of molecular solids and liquids and the self-assembly of both natural and synthetic macromolecules. In collaboration with brilliant students and postdocs, I have developed computational methodologies and carried out computer simulations to understand the phase behavior and properties of systems ranging from small molecules, such as water, to larger molecules such as surfactants and lipid bilayers, as well as natural and synthetic macromolecules. Other applications have been aimed at understanding the sensing and gating mechanisms Nature’s nano-scale machines, such as membrane-bound ion channels, as well as designing molecular therapeutics to combat both viral and bacterial infections.

Axel Kohlmeyer
Professor of Research / HPC Director
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Biography
Axel Kohlmeyer is Associate Director of the Institute for Computational Molecular Science, and the Leader of the High-Performance Computing (HPC) Team at Temple University in Philadelphia, USA.
He is also an External Associate of the International Centre for Theoretical Physics in Trieste, Italy, where he collaborates with ICTP HPC staff on HPC-related activities and teaches in the International HPC Master program hosted by ICTP and SISSA in Trieste.
His main research interests are in software development and engineering for scientific software in general and for simulation and analysis of molecular dynamics simulation on highly parallel modern computer architectures in particular. He also is interested in improving HPC education for scientists and engineers. He is a core developer and co-maintainer of the LAMMPS Molecular Dynamics software package and has contributed to several other popular scientific software packages like VMD, Quantum-Espresso, HOOMD-blue,CPMD or CP2k.
Past positions of his academic career include the International Centre for Theoretical Physics in Trieste, Italy, the Center for Molecular Modeling at the University of Pennsylvania in Philadelphia, USA, the Center for Theoretical Chemistry at the Ruhr-University Bochum, Germany, and the Department for Theoretical Chemistry at the University of Ulm, Germany.
He obtained his PhD (= Dr.rer.nat.) and Dipl.-Chem. degrees in Theoretical Chemisty at the University of Ulm under the supervision of Professor Wolfgang Witchel and Dr. Eckhard Spohr.
X-ray diffraction and computation yield the structure of alkanethiols on gold(111), A. Cossaro, R.Mazzarello, R. Rousseau, L. Casalis, A. Verdini, A. Kohlmeyer, L. Floreano, S. Scandolo, A. Morgante, M.L. Klein, G. Scoles, Science 321, 943-946 (2008). (Link)
LAMMPS – a flexible simulation tool for particle-based materials modeling at the atomic, meso, and continuum scales, Aidan P. Thompson, H. Metin Aktulg, Richard Berger, Dan S.Bolintineanu, W. Michael Brown, Paul S. Crozier, Pieter J .in ‘t Veld, Axel Kohlmeyer, Stan G. Moore, Trung Dac Nguyen, RayShan, Mark J. Stevens, Julien Tranchida, Christian Trott, Steven J. Plimpton, Computer Physics Communications 271 (2022). Link
Fast Analysis of Molecular Dynamics Trajectories with Graphics Processing Units: Radial Distribution Function Histogramming, B.G. Levine, J.E. Stone, A. Kohlmeyer, J. Comput. Phys. 230(9), 3556-3569 (2011) (Link)
TopoGromacs: Automated Topology Conversion from CHARMM to GROMACS within VMD,Josh V. Vermaas, David J. Hardy, John E. Stone, Emad Tajkhorshid, and Axel Kohlmeyer, AC Publications (2016). Link

Vincenzo Carnevale
Associate Professor
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PhD: 2007, SISSA – Scuola Internazionale Superiore di Studi Avanzati, Trieste, Italy
Affiliation: Department of Biology, Temple University
Phone: 215-204-4214
Email: [email protected]
Office: SERC 710
Bio and Research description:
Vincenzo Carnevale received B.Sc. and M.Sc. degrees in Physics from the University of Pisa and a PhD from SISSA – Scuola Internazionale Superiore di Studi Avanzati in Trieste, Italy. He currently holds the position of Associate Professor in the Department of Biology.
The Carnevale research group uses statistical physics and machine learning approaches to investigate sequence-structure-function relations in proteins. A central theme of the group’s research is how interactions give rise to collective phenomena and complex emergent behaviors. At the level of genes, the group is interested in epistasis – the complex entanglement phenomenon that causes amino acids to evolve in a concerted fashion – and how this shapes molecular evolution. At the cellular level, the group investigates how intermolecular interactions drive biomolecules toward self-organization and pattern formation. A long-term goal of the group is understanding the molecular underpinnings of electrical signaling in excitable cells. Toward these goals, the group applies and actively develops an extensive arsenal of theoretical and computational approaches including statistical (mean)field theories, Monte Carlo and molecular dynamics simulations, statistical inference of generative models, and deep learning.

Mark DelloStritto
Research Assistant Professor
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Biography
Mark DelloStritto received a Ph.D. in Physics from the Pennsylvania State University in 2017 and joined Professor Klein’s research group as a postdoctoral fellow. Mark’s research is focused on studying the relationship between structure, dynamics, and chemistry in fluids and polymers. Recent topics include the adsorption of water and ions at oxide interfaces, the dependence of the structural and electronic properties of ion solvation on the choice of density functional, vibrational spectroscopy of water and polymer systems, improving the properties of polymer systems by modifying polymer chemistry, and the application of neural network potentials to extend ab-initio calculations.

Ahmed M. Abdelwaly
Research Assistant Professor
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Biography
Ahmed Abdelwaly obtained a bachelor’s degree in Pharmacy from Sana’a University – Yemen in 2004, with a cumulative grade of very good. He joined the academic sector in 2008 and worked as a teaching assistant at Thamar University in Yemen for four years , then he moved to Egypt to finish his postgraduate studies. He obtained a master’s degree in Medicinal Chemistry from Suez Canal University in 2016, then a Ph.D. in the same field from Cairo University in 2021. His research was conducted during the past ten years in drug design and discovery laboratories, and he focused on the design and organic synthesis of small molecules to target medical conditions such as chronic obstructive pulmonary disease, bronchial asthma, addiction, Alzheimer’s disease, and inflammatory diseases.
After obtaining his master’s degree, he worked as an assistant lecturer at the Department of Pharmaceutical Chemistry at Suez Canal University for two years. In 2017, he joined the Biomedical Sciences Program at Zewail City of Science and Technology as an assistant lecturer and Researcher, then was promoted in 2022 to become an Assistant Professor and postdoctoral research associate at the same university.
Ahmed is currently a Research Assistant Professor in the Institute for Computational Molecular Sciences (ICMS) at Temple University.

George Petersson
Distinguished Adjunct Professor of Chemistry
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Biography
Selected Awards | Ph.D. California Institute of Technology B.Sc. The City College of New York Kitasato Medal, John S. Burlew Award from the Connecticut Valley Section of the American Chemical Society |
Interests
Select Publications
“Improved Geometries and Frequencies with the PFD-3B DFT Method” Jason M. Breslin, Michael J. Frisch, and George A. Petersson, J. Phys. Chem.,A, 126, 5814-5820 (2022) LINK
“A Bond-Energy/Bond-Order and Populations Relationship” Zulueta, Barbaro; Tulyani, Sonia; Westmoreland, Phillip; Frisch, Michael; Petersson, E. James; Petersson, George; Keith, John Journal of Chemical Theory and Computation 18, 4774-4794(2022). LINK
“Synthesis and characterization of fluorescent amino acid dimethylaminoacridonylalanine (PJ-11498VP)” Chloe M. Jones, George A. Petersson, and E. James Petersson, Arkivoc 2021,97 (2021). LINK
“Three Body Dispersion Corrections to the Spherical Atom Model: the PFD-3B Density Functional” George A. Petersson, Michael J. Frisch, Frank Dobek, and Barbaro Zulueta, J. Phys. Chem. 124, 10296 (2020). LINK

Subhajit Acharya
Postdoctoral Research Fellow
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Biography
I received my B.Sc. in Chemistry from Ramakrishna Mission Residential College, Narendrapur (Kolkata, India) in 2016. Subsequently, I joined the integrated Ph.D. program at the Indian Institute of Science, Bengaluru, India. After completing my M.Sc., I joined Prof. Biman Bagchi’s research group at the Solid State and Structural Chemistry Unit of the Indian Institute of Science (Bengaluru, India) in 2018. During my Ph.D., I formulated the multidimensional non-Markovian theory and explored it in studying kinetics in several systems, such as the cis-trans isomerization reaction of stilbene, insulin dimer dissociation in water, and gas-liquid nucleation. I also studied the diffusion-entropy scaling relation, the hydrodynamic Stokes law at molecular length scales, microdroplet chemistry, dielectric relaxation of dipolar confined fluids, etc. Currently, I am working with Prof. Michael L. Klein’s group at Temple University as a post-doctoral research associate. Looking ahead, I aspire to remain in academia to continue my research and teaching.

Min-Sang Lee
Postdoctoral Fellow Research Associate

Xifan Wu
Professor of Physics
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Biography
Research Interests
My research interest lies in both the applications and algorithms of first-principles computational methods. Currently, I am particularly interested in understanding and solving physical problems in solids and liquids by exploring the locality of Wanniers orbitals. These problems include: 1. The inverse design of superlattices with desired multifunctionalities. 2. The developments and applications of order-N exact exchange based functionals (PBE0 hybrid functional, GW quasi-particle approximation, etc.).
Key Publications
Xifan Wu, Karin M. Rabe, David Vanderbilt, “Interface enhancement of ferroelectricity in CaTiO3/BaTiO3 superlattices,” submitted to Physical Review Letters, arXiv:1009.1448.
Xifan Wu, Eric J. Walter, Andrew M. Rappe, Roberto Car and Annabella Selloni, “Hybrid density functional calculations of the band gap of GaxIn1-xN,” Physical Review B 80, 115201 (2009).
Wei Chen, Xifan Wu, and Roberto Car, “X-ray absorption signatures of the molecular environment in water and ice,” Physical Review Letters 105, 017802 (2010).
Xifan Wu, Annabella Selloni, and Roberto Car, “Order N implementation of exact exchange in extended insulating system,” Physical Review B 79, 085102 (Editors’ Suggestions and selected for synopsis in Physics) (2009).
Xifan Wu, Massimiliano Stengle, Karin M. Rabe, and David Vanderbilt, “Predicting polarization and nonlinear dielectric response of arbitrary perovskite superlattice sequence,” Physical Review Letters 101, 087601 (Editors’ Suggestions) (2008).
Xifan Wu, Oswaldo Diéguez, Karin M. Rabe, and David Vanderbilt, “Wannier-based denition of layer polarizations in perovskite superlattices,” Physical Review Letters 97, 107602 (2006).






